Index

_

__author__ (in module bin.bare_globals) (in module bin.bibliographyaddins) (in module bin.bibliographyclassifier) (in module bin.bibliographydatabase) (in module bin.complianceenforcer) (in module bin.debug) (in module bin.docxtotei) (in module bin.frontmatterparser) (in module bin.idgenerator) (in module bin.interactive) (in module bin.listclassifier) (in module bin.manipulate), [1] (in module bin.meTypeset) (in module bin.metadata) (in module bin.nlmmanipulate) (in module bin.nlmprocessor) (in module bin.referencelinker) (in module bin.settingsconfiguration) (in module bin.sizeclassifier) (in module bin.teimanipulate) (in module bin.unoconvtodocx) (in module bin.xslchainer) (in module heimpt.disseminate) (in module heimpt.globals) (in module heimpt.heimpt) (in module heimpt.interactive) (in module heimpt.merge) (in module heimpt.prepare) (in module heimpt.settingsconfiguration)

__email__ (in module bin.bare_globals) (in module bin.bibliographyaddins) (in module bin.bibliographyclassifier) (in module bin.bibliographydatabase) (in module bin.complianceenforcer) (in module bin.debug) (in module bin.docxtotei) (in module bin.frontmatterparser) (in module bin.idgenerator) (in module bin.interactive) (in module bin.listclassifier) (in module bin.manipulate) (in module bin.meTypeset) (in module bin.metadata) (in module bin.nlmmanipulate) (in module bin.nlmprocessor) (in module bin.referencelinker) (in module bin.settingsconfiguration) (in module bin.sizeclassifier) (in module bin.teimanipulate) (in module bin.unoconvtodocx) (in module bin.xslchainer) _colordiff() (bin.interactive.Interactive method) (heimpt.interactive.Interactive method) _colorize() (bin.interactive.Interactive method) (heimpt.interactive.Interactive method) _encoding() (bin.interactive.Interactive method) (heimpt.interactive.Interactive method) _fsencoding() (bin.interactive.Interactive method) (heimpt.interactive.Interactive method)

A

add_error_tag() (bin.nlmmanipulate.NlmManipulate static method) append_safe() (bin.manipulate.Manipulate static method) apply_transformations() (heimpt.tools.archive.postProcess.PostProcess method) (heimpt.tools.archive.TEIProcess.TEIProcess method) arguments_parse() (heimpt.heimpt.MPT method)

attach_metadata() (bin.metadata.Metadata method) attachment_query (bin.zotero.libzotero.LibZotero attribute) author (in module conf) autoapi_dirs (in module conf) autoapi_type (in module conf) autodoc_mock_imports (in module conf)

B

BibliographyAddins (class in bin.bibliographyaddins) BibliographyClassifier (class in bin.bibliographyclassifier) BibliographyDatabase (class in bin.bibliographydatabase) bin (module) bin.bare_globals (module) bin.bibliographyaddins (module) bin.bibliographyclassifier (module) bin.bibliographydatabase (module) bin.captionclassifier (module) bin.complianceenforcer (module) bin.debug (module) bin.docopt (module) bin.docxtotei (module) bin.frontmatterparser (module) bin.globals (module) bin.idgenerator (module) bin.interactive (module) bin.listclassifier (module) bin.manipulate (module)

bin.metadata (module) bin.meTypeset (module) bin.nlmmanipulate (module) bin.nlmprocessor (module) bin.referencelinker (module) bin.settingsconfiguration (module) bin.sizeclassifier (module) bin.teimanipulate (module) bin.teitonlm (module) bin.unoconvtodocx (module) bin.xslchainer (module) bin.zotero (module) bin.zotero._noteProvider (module) bin.zotero._noteProvider.gnoteProvider (module) bin.zotero.libzotero (module) bin.zotero.zotero_item (module) Book (class in bin.bibliographydatabase) BookChapter (class in bin.bibliographydatabase) build_contrib_xml() (heimpt.plugins.import.omp.omp.OMPImport method)

C

c (in module heimpt.tools.archive.reportlab) cache (in module bin.zotero.zotero_item) call_typesetter() (heimpt.heimpt.MPT method) CaptionClassifier (class in bin.captionclassifier) change_outer() (bin.teimanipulate.TeiManipulate method) change_self_size() (bin.teimanipulate.TeiManipulate method) change_wmf_image_links() (bin.teimanipulate.TeiManipulate method) chapters (in module heimpt.tools.scripts.endnotes2footnotes) (in module heimpt.tools.scripts.endnotes2footnotes.snd) check_applications() (heimpt.heimpt.MPT method) check_file_exists() (bin.globals.GV method) check_for_continued_references() (bin.teimanipulate.TeiManipulate method) check_for_disallowed_elements() (bin.teimanipulate.TeiManipulate method) check_program() (heimpt.globals.GV method) check_settings_file_exists() (bin.settingsconfiguration.Settings static method) choose_candidate() (bin.interactive.Interactive method) (heimpt.interactive.Interactive method) citations_to_references() (heimpt.prepare.Prepare method) (heimpt.tools.archive.postProcess.PostProcess method) clean() (in module heimpt.cmos2jats_citations) clean_introduction_headings() (bin.sizeclassifier.SizeClassifier method) clean_line_breaks() (bin.sizeclassifier.SizeClassifier method) clean_path() (bin.settingsconfiguration.Settings static method) clean_proprietary() (bin.docxtotei.DocxToTei method) clean_ref_items() (bin.referencelinker.ReferenceLinker method) clean_references() (heimpt.prepare.Prepare method) clean_refs() (bin.nlmmanipulate.NlmManipulate method) cleanup() (bin.referencelinker.ReferenceLinker method) (bin.teimanipulate.TeiManipulate method) close_and_open_tag() (bin.nlmmanipulate.NlmManipulate method) close_and_open_tag_not_styled() (bin.nlmmanipulate.NlmManipulate method) cmos1 (in module heimpt.cmos2jats_citations) cmos2 (in module heimpt.cmos2jats_citations) cmos3 (in module heimpt.cmos2jats_citations) collection_query (bin.zotero.libzotero.LibZotero attribute) color_diff_suffix() (bin.interactive.Interactive method) (heimpt.interactive.Interactive method) colordiff() (bin.interactive.Interactive method) (heimpt.interactive.Interactive method) colorize() (bin.interactive.Interactive method) (heimpt.interactive.Interactive method)

ComplianceEnforcer (class in bin.complianceenforcer) concat_path() (bin.settingsconfiguration.Settings static method) conf (module) contains() (heimpt.tools.archive.postProcess.PostProcess method) contains_graphic() (bin.teimanipulate.TeiManipulate method) convert_citation2reference() (in module heimpt.cmos2jats_citations) convert_int_to_roman() (heimpt.prepare.Prepare method) (heimpt.tools.archive.postProcess.PostProcess method) convert_roman_to_int() (heimpt.tools.archive.postProcess.PostProcess method) convert_to_headings() (bin.sizeclassifier.SizeClassifier method) copy_folder() (bin.globals.GV static method) copy_submission_files() (heimpt.plugins.import.omp.omp.OMPImport method) copyright (in module conf) correlate_styled_headings() (bin.sizeclassifier.SizeClassifier method) cre() (in module heimpt.cmos2jats_citations) create_automated_references() (heimpt.tools.archive.postProcess.PostProcess method) create_book_bits() (heimpt.merge.Merge method) create_book_part_bits() (heimpt.merge.Merge method) create_dirs_recursive() (heimpt.globals.GV method) create_files() (heimpt.tools.archive.postProcess.PostProcess method) (heimpt.tools.archive.TEIProcess.TEIProcess method) create_footnote_file() (heimpt.tools.archive.postProcess.PostProcess method) create_journal_jats() (heimpt.merge.Merge method) create_merged_file() (heimpt.heimpt.MPT method) (heimpt.tools.archive.postProcess.PostProcess method) create_metadata_path() (heimpt.merge.Merge method) (heimpt.prepare.Prepare method) create_named_file() (heimpt.heimpt.MPT method) create_output() (heimpt.disseminate.Disseminate method) (heimpt.tools.archive.postProcess.PostProcess method) create_output_bits() (heimpt.merge.Merge method) create_output_jats() (heimpt.merge.Merge method) create_output_path() (heimpt.heimpt.MPT method) create_refs_csv() (heimpt.tools.archive.postProcess.PostProcess method) create_xml_file() (heimpt.prepare.Prepare method) create_zip() (heimpt.tools.archive.postProcess.PostProcess method) creator_query() (bin.zotero.libzotero.LibZotero static method) current_body (in module heimpt.tools.scripts.endnotes2footnotes) (in module heimpt.tools.scripts.endnotes2footnotes.snd)

D

data (in module heimpt.tools.archive.jats_requirements) debug (bin.zotero.libzotero.LibZotero attribute) Debug (class in bin.debug) (class in heimpt.debug) Debuggable (class in bin.debug) (class in heimpt.debug) define_tables() (in module heimpt.plugins.import.omp.omptables) delete_special_lines() (bin.nlmmanipulate.NlmManipulate method) deleted_query (bin.zotero.libzotero.LibZotero attribute) displayable_path() (bin.interactive.Interactive method) (heimpt.interactive.Interactive method)

Disseminate (class in heimpt.disseminate) do_cit_bibliography() (bin.teimanipulate.TeiManipulate method) do_file_io() (heimpt.merge.Merge method) do_list_bibliography() (bin.teimanipulate.TeiManipulate method) doc2xml() (heimpt.tools.archive.runTest.Pipeline method) docopt() (in module bin.docopt) (in module heimpt.docopt) DocxToTei (class in bin.docxtotei) double_p_compliance() (bin.nlmmanipulate.NlmManipulate method) downgrade_oversize_headings() (bin.sizeclassifier.SizeClassifier method) drop_addin() (bin.teimanipulate.TeiManipulate method) drop_addin_json() (bin.teimanipulate.TeiManipulate method)

E

enable_debug() (bin.debug.Debug method) (heimpt.debug.Debug method) enable_prompt() (bin.debug.Debug method) encapsulate_headings() (bin.sizeclassifier.SizeClassifier method) enclose() (bin.teimanipulate.TeiManipulate method) enclose_all() (bin.teimanipulate.TeiManipulate method)

enclose_and_change_self_size() (bin.teimanipulate.TeiManipulate method) enclose_bibliography_tags() (bin.teimanipulate.TeiManipulate method) exclude_patterns (in module conf) extensions (in module conf) extract_contents() (bin.referencelinker.ReferenceLinker method) extract_metadata_fields() (bin.metadata.Metadata method)

F

f (in module heimpt.tools.scripts.endnotes2footnotes) (in module heimpt.tools.scripts.endnotes2footnotes.snd) (in module heimpt.tools.scripts.stripTitleNumbering) fatal_error() (bin.debug.Debug static method) (heimpt.debug.Debug static method) (heimpt.globals.GV static method) FILE_STAGE_TO_PATH (in module heimpt.plugins.import.omp.omp) final_clean() (bin.nlmmanipulate.NlmManipulate method) final_headings() (bin.sizeclassifier.SizeClassifier method) find_or_create_aff_xml() (heimpt.plugins.import.omp.omp.OMPImport method) find_or_create_element() (bin.nlmmanipulate.NlmManipulate method) (bin.teimanipulate.TeiManipulate method) find_reference_list() (bin.nlmmanipulate.NlmManipulate method)

find_reference_list_in_word_list() (bin.teimanipulate.TeiManipulate method) find_references_from_cue() (bin.teimanipulate.TeiManipulate method) find_text() (bin.nlmmanipulate.NlmManipulate method) fns (in module heimpt.tools.scripts.endnotes2footnotes.snd) format_author() (bin.zotero.zotero_item.zoteroItem method) format_date() (bin.zotero.zotero_item.zoteroItem method) format_multiple_author() (bin.zotero.zotero_item.zoteroItem method) format_publication() (bin.zotero.zotero_item.zoteroItem method) format_single_author() (bin.zotero.zotero_item.zoteroItem method) format_tags() (bin.zotero.zotero_item.zoteroItem method) format_title() (bin.zotero.zotero_item.zoteroItem method) FrontMatterParser (class in bin.frontmatterparser) full_format() (bin.zotero.zotero_item.zoteroItem method) fuse_references() (bin.nlmmanipulate.NlmManipulate method)

G

generate_path() (bin.globals.GV method) get_chapter_files_from_db() (heimpt.plugins.import.omp.omp.OMPImport method) get_citation() (bin.bibliographydatabase.Book method) (bin.bibliographydatabase.BookChapter method) (bin.bibliographydatabase.JournalArticle method) (bin.bibliographydatabase.Person method) (bin.bibliographydatabase.Website method) get_etree() (heimpt.tools.archive.postProcess.PostProcess method) get_fig_ids_body() (heimpt.tools.archive.postProcess.PostProcess method) get_fig_refs_body() (heimpt.tools.archive.postProcess.PostProcess method) get_file_text() (bin.frontmatterparser.FrontMatterParser method) (bin.manipulate.Manipulate static method) get_files_from_db() (heimpt.plugins.import.omp.omp.OMPImport method) get_footnotes_back() (heimpt.tools.archive.postProcess.PostProcess method) get_footnotes_body() (heimpt.tools.archive.postProcess.PostProcess method) get_module_name() (bin.debug.Debug method) (bin.debug.Debuggable method) (heimpt.debug.Debug method) (heimpt.disseminate.Disseminate method) (heimpt.heimpt.MPT method) (heimpt.merge.Merge method) (heimpt.prepare.Prepare method) get_note() (bin.zotero.zotero_item.zoteroItem method) get_object_list() (bin.teimanipulate.TeiManipulate method) get_omp_filename() (in module heimpt.plugins.import.omp.omp) get_ref_ids_back() (heimpt.tools.archive.postProcess.PostProcess method) get_ref_ids_body() (heimpt.tools.archive.postProcess.PostProcess method) get_refs_mixed_back() (heimpt.tools.archive.postProcess.PostProcess method) get_saxon_path() (heimpt.disseminate.Disseminate method) get_setting() (bin.settingsconfiguration.Settings method) (heimpt.settingsconfiguration.Settings method) get_settings_file() (bin.settingsconfiguration.Settings static method) get_sizes() (bin.sizeclassifier.SizeClassifier method) get_sizes_ordered() (bin.sizeclassifier.SizeClassifier static method) get_stringified_children() (heimpt.tools.archive.postProcess.PostProcess method) get_stripped_text() (bin.manipulate.Manipulate static method) get_submission_to_import() (heimpt.plugins.import.omp.omp.OMPImport method) get_unreferenced_footnotes() (heimpt.tools.archive.postProcess.PostProcess method) get_values() (bin.sizeclassifier.SizeClassifier static method) get_xml_parts() (heimpt.merge.Merge method) getActualAuthorsBySubmission() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getAllPublicationFormatsBySubmission() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getAnnouncementsByPress() (heimpt.plugins.import.omp.ompdal.OMPDAL method) getAnnouncementsByType() (heimpt.plugins.import.omp.ompdal.OMPDAL method) getAnnouncementSettings() (heimpt.plugins.import.omp.ompdal.OMPDAL method) getAnnouncementType() (heimpt.plugins.import.omp.ompdal.OMPDAL method) getAnnouncementTypeSettings() (heimpt.plugins.import.omp.ompdal.OMPDAL method) getAuthor() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getAuthorsByChapter() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getAuthorsByPress() (heimpt.plugins.import.omp.ompdal.OMPDAL method) getAuthorsBySubmission() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getAuthorSettings() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getCategoriesByPress() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getCategoriesBySeries() (heimpt.plugins.import.omp.ompdal.OMPDAL method) getCategory() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getCategoryByPathAndPress() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getCategoryBySubmissionId() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getCategorySettings() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getChapter() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getChaptersBySubmission() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getChapterSettings() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getDigitalPublicationFormats() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method)

getEditorsBySubmission() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getIdentificationCodesByPublicationFormat() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getLatestRevisionOfChapterFileByPublicationFormat() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getLatestRevisionOfEBook() (heimpt.plugins.import.omp.ompdal.OMPDAL method) getLatestRevisionOfFullBookFileByPublicationFormat() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getLocalizedCategorySettings() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getLocalizedSeriesSettings() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getLocalizedValue() (heimpt.plugins.import.ojs.ojsdal.OMPSettings method) (heimpt.plugins.import.omp.ompdal.OMPSettings method) getMarketsByPublicationFormat() (heimpt.plugins.import.omp.ompdal.OMPDAL method) getMetaDataPublishedDates() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getPhysicalPublicationFormats() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getPress() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getPresses() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getPressSettings() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getPublicationDatesByPublicationFormat() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getPublicationFormat() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getPublicationFormatByName() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getPublicationFormatsBySubmission() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getPublicationFormatSettings() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getPublishedSubmission() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getRepresentativesBySubmission() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getReviewFilesByPublicationFormat() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getSeries() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getSeriesByPathAndPress() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getSeriesByPress() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getSeriesBySubmissionId() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getSeriesEditors() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getSeriesSettings() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getSubmission() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getSubmissionFileBySubmission() (heimpt.plugins.import.omp.ompdal.OMPDAL method) getSubmissionFileSettings() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getSubmissionsByCategory() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getSubmissionsByPress() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getSubmissionsBySeries() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getSubmissionSettings() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getUserGroupSettings() (heimpt.plugins.import.omp.ompdal.OMPDAL method) getUserSettings() (heimpt.plugins.import.ojs.ojsdal.OMPDAL method) (heimpt.plugins.import.omp.ompdal.OMPDAL method) getValues() (heimpt.plugins.import.ojs.ojsdal.OMPSettings method) (heimpt.plugins.import.omp.ompdal.OMPSettings method) GnoteNote (class in bin.zotero._noteProvider.gnoteProvider) GnoteProvider (class in bin.zotero._noteProvider.gnoteProvider) gnotero_format() (bin.zotero.zotero_item.zoteroItem method) GV (class in bin.bare_globals) (class in bin.globals) (class in heimpt.globals)

H

handle_bibliography() (bin.bibliographyaddins.MendeleyHandler method) (bin.bibliographyaddins.ZoteroHandler method) handle_bold_only_paragraph() (bin.sizeclassifier.SizeClassifier static method) handle_capital_only_paragraph() (bin.sizeclassifier.SizeClassifier method) handle_footnote_item() (bin.listclassifier.ListClassifier method) handle_heading() (bin.sizeclassifier.SizeClassifier static method) handle_input() (bin.bibliographyclassifier.BibliographyClassifier method) (bin.referencelinker.ReferenceLinker method) handle_metypesetdeleted() (bin.teimanipulate.TeiManipulate method) handle_nested_elements() (bin.nlmmanipulate.NlmManipulate static method) handle_platform() (bin.globals.GV method) handle_reference_item() (bin.listclassifier.ListClassifier method) handle_search() (bin.referencelinker.ReferenceLinker method) handle_single_item_list() (bin.sizeclassifier.SizeClassifier method) handle_stranded_reference_titles_from_cues() (bin.nlmmanipulate.NlmManipulate method) handle_wmf() (bin.docxtotei.DocxToTei method) hashKey() (bin.zotero.zotero_item.zoteroItem method) heimpt (module) heimpt.cmos2jats_citations (module) heimpt.debug (module) heimpt.disseminate (module) heimpt.docopt (module) heimpt.globals (module) heimpt.heimpt (module) heimpt.interactive (module) heimpt.merge (module) heimpt.plugins (module)

heimpt.plugins.import (module) heimpt.plugins.import.ImportInterface (module) heimpt.plugins.import.ojs (module) heimpt.plugins.import.ojs.ojs (module) heimpt.plugins.import.ojs.ojs_tables (module) heimpt.plugins.import.ojs.ojsdal (module) heimpt.plugins.import.omp (module) heimpt.plugins.import.omp.omp (module) heimpt.plugins.import.omp.ompdal (module) heimpt.plugins.import.omp.omptables (module) heimpt.prepare (module) heimpt.settingsconfiguration (module) heimpt.tools (module) heimpt.tools.archive (module) heimpt.tools.archive.booklistToJSON (module) heimpt.tools.archive.heidicon2movie (module) heimpt.tools.archive.jats_requirements (module) heimpt.tools.archive.postProcess (module) heimpt.tools.archive.reportlab (module) heimpt.tools.archive.runTest (module) heimpt.tools.archive.TEIProcess (module) heimpt.tools.scripts (module) heimpt.tools.scripts.endnotes2footnotes (module) heimpt.tools.scripts.endnotes2footnotes.snd (module) heimpt.tools.scripts.stripTitleNumbering (module) html_static_path (in module conf) html_theme (in module conf) html_theme_path (in module conf)

I

IdGenerator (class in bin.idgenerator) Import (class in heimpt.plugins.import.ImportInterface) info_query (bin.zotero.libzotero.LibZotero attribute) initialize() (heimpt.plugins.import.omp.omp.OMPImport method) inject_chapter_metadata() (heimpt.plugins.import.omp.omp.OMPImport method) inject_submission_metadata() (heimpt.plugins.import.omp.omp.OMPImport method) input_() (bin.interactive.Interactive method) (heimpt.interactive.Interactive method)

input_options() (bin.interactive.Interactive method) (heimpt.interactive.Interactive method) insert_break() (bin.nlmmanipulate.NlmManipulate method) int_to_roman() (bin.listclassifier.ListClassifier method) Interactive (class in bin.interactive) (class in heimpt.interactive) is_json() (heimpt.globals.GV method) is_number() (bin.globals.GV static method)

J

JATS_format() (bin.zotero.zotero_item.zoteroItem method)

JournalArticle (class in bin.bibliographydatabase)

L

LANG_ATTR (in module heimpt.plugins.import.omp.omp) LibZotero (class in bin.zotero.libzotero) linguistic_cues() (bin.bibliographyclassifier.BibliographyClassifier method) link() (bin.captionclassifier.CaptionClassifier method) (bin.referencelinker.ReplaceObject method) (bin.referencelinker.ReplaceStub method)

link_items() (bin.referencelinker.ReferenceLinker method) ListClassifier (class in bin.listclassifier) load_configured_presses() (heimpt.plugins.import.omp.omp.OMPImport method) load_dom_read() (bin.manipulate.Manipulate method) load_dom_tree() (bin.manipulate.Manipulate method) LOG_FILE (in module heimpt.tools.archive.postProcess)

M

main() (in module bin.bibliographyclassifier) (in module bin.bibliographydatabase) (in module bin.captionclassifier) (in module bin.idgenerator) (in module bin.meTypeset) (in module bin.nlmprocessor) (in module bin.referencelinker) (in module heimpt.disseminate) (in module heimpt.heimpt) (in module heimpt.merge) (in module heimpt.prepare) (in module heimpt.tools.archive.TEIProcess) (in module heimpt.tools.archive.booklistToJSON) (in module heimpt.tools.archive.postProcess) (in module heimpt.tools.archive.runTest)

Manipulate (class in bin.manipulate) match() (bin.zotero.zotero_item.zoteroItem method) matchScore() (bin.zotero._noteProvider.gnoteProvider.GnoteNote method) MendeleyHandler (class in bin.bibliographyaddins) Merge (class in heimpt.merge) merge_metadata() (heimpt.prepare.Prepare method) merge_repeating_neighbours() (heimpt.tools.archive.postProcess.PostProcess method) Metadata (class in bin.metadata) MeTypeset (class in bin.meTypeset) mk_dir() (bin.globals.GV method) mkdir() (bin.debug.Debug method) modify_files() (heimpt.tools.archive.postProcess.PostProcess method) move_size_div() (bin.teimanipulate.TeiManipulate method) MPT (class in heimpt.heimpt)

N

nest_headings() (bin.sizeclassifier.SizeClassifier method) NlmManipulate (class in bin.nlmmanipulate) ns_tei (in module heimpt.tools.archive.TEIProcess)

numeral_map (in module heimpt.globals) (in module heimpt.tools.archive.TEIProcess) (in module heimpt.tools.archive.postProcess)

O

object_type() (bin.bibliographydatabase.Book static method) (bin.bibliographydatabase.BookChapter static method) (bin.bibliographydatabase.JournalArticle static method) (bin.bibliographydatabase.Website static method) OJSImport (class in heimpt.plugins.import.ojs.ojs) OMPDAL (class in heimpt.plugins.import.ojs.ojsdal) (class in heimpt.plugins.import.omp.ompdal) OMPImport (class in heimpt.plugins.import.omp.omp)

OMPItem (class in heimpt.plugins.import.ojs.ojsdal) (class in heimpt.plugins.import.omp.ompdal) OMPSettings (class in heimpt.plugins.import.ojs.ojsdal) (class in heimpt.plugins.import.omp.ompdal) open() (bin.zotero._noteProvider.gnoteProvider.GnoteNote method) organize_output() (heimpt.heimpt.MPT method) OtherHandler (class in bin.bibliographyaddins) output (in module heimpt.tools.archive.heidicon2movie)

P

parse_authors() (bin.frontmatterparser.FrontMatterParser method) parse_query() (bin.zotero.libzotero.LibZotero method) parse_title() (bin.frontmatterparser.FrontMatterParser method) path_to_omp_submission_file() (in module heimpt.plugins.import.omp.omp) path_to_submission_metadata() (in module heimpt.plugins.import.omp.omp) path_to_submission_output() (in module heimpt.plugins.import.omp.omp) pdf() (heimpt.tools.archive.runTest.Pipeline method) Person (class in bin.bibliographydatabase) Pipeline (class in heimpt.tools.archive.runTest) PostProcess (class in heimpt.tools.archive.postProcess) pre_clean() (bin.metadata.Metadata method) pre_cleanup() (bin.teitonlm.TeiToNlm method) Prepare (class in heimpt.prepare) print_() (bin.debug.Debug method) (bin.interactive.Interactive method) (heimpt.debug.Debug method) (heimpt.interactive.Interactive method) print_console() (heimpt.debug.Debug method) print_debug() (bin.debug.Debug method) (heimpt.debug.Debug method)

print_definitions() (heimpt.tools.archive.TEIProcess.TEIProcess method) print_row() (in module heimpt.tools.archive.jats_requirements) print_unreferenced_figs() (heimpt.tools.archive.postProcess.PostProcess method) process() (heimpt.disseminate.Disseminate method) (heimpt.merge.Merge method) (heimpt.prepare.Prepare method) process_dash_list() (bin.listclassifier.ListClassifier method) process_enclosed_ref_list() (bin.listclassifier.ListClassifier method) process_ibid_authors() (bin.referencelinker.ReferenceLinker method) process_node_for_tags() (bin.nlmmanipulate.NlmManipulate method) process_number_list() (bin.listclassifier.ListClassifier method) process_superscript_footnotes() (bin.listclassifier.ListClassifier method) process_zotero() (bin.bibliographydatabase.BibliographyDatabase method) project (in module conf) prune() (bin.referencelinker.ReferenceLinker method) PUBLICATION_FORMAT_MAPPING (in module heimpt.plugins.import.omp.omp) PYTHON_IMPORT_FAILED_LXML_MODULE (in module heimpt.merge) (in module heimpt.prepare)

R

read_chapter_metadata() (heimpt.plugins.import.omp.omp.OMPImport method) read_command_line() (bin.meTypeset.MeTypeset static method) (heimpt.disseminate.Disseminate static method) (heimpt.heimpt.MPT static method) (heimpt.merge.Merge static method) (heimpt.prepare.Prepare static method) read_json() (heimpt.globals.GV method) read_project_config() (heimpt.plugins.import.omp.omp.OMPImport method) read_submission_metadata() (heimpt.plugins.import.omp.omp.OMPImport method) reader (in module heimpt.tools.archive.heidicon2movie) recurse() (in module heimpt.tools.archive.jats_requirements) ReferenceLinker (class in bin.referencelinker) references_to_citations() (heimpt.tools.archive.postProcess.PostProcess method) reflist_indent_method() (bin.nlmmanipulate.NlmManipulate method) reflist_year_match_method() (bin.nlmmanipulate.NlmManipulate method) refs (in module heimpt.tools.scripts.endnotes2footnotes) release (in module conf) remove_all_elements_of_type() (heimpt.tools.archive.postProcess.PostProcess method) remove_comments() (heimpt.tools.archive.postProcess.PostProcess method) remove_duplicate_http_links() (heimpt.tools.archive.postProcess.PostProcess method) remove_duplicate_refs() (heimpt.tools.archive.postProcess.PostProcess method) remove_element() (heimpt.prepare.Prepare method) (heimpt.tools.archive.postProcess.PostProcess method) remove_empty_elements() (bin.nlmmanipulate.NlmManipulate method) remove_empty_headings() (bin.sizeclassifier.SizeClassifier method) remove_name_duplicates_speech() (heimpt.tools.archive.postProcess.PostProcess method) remove_not_used_in_back() (heimpt.tools.archive.postProcess.PostProcess method) remove_reference_numbering() (bin.nlmmanipulate.NlmManipulate method) remove_table_references() (heimpt.tools.archive.postProcess.PostProcess method) remove_tags() (heimpt.prepare.Prepare method) renest_headings() (bin.sizeclassifier.SizeClassifier method) replace() (bin.manipulate.Manipulate method) replace_in_tail() (bin.captionclassifier.CaptionClassifier method) (bin.referencelinker.ReplaceStub method) replace_in_text() (bin.captionclassifier.CaptionClassifier method) (bin.referencelinker.ReplaceStub method) replace_in_text_and_update_others() (bin.referencelinker.ReplaceStub method) replace_value_of_tag() (bin.manipulate.Manipulate static method) ReplaceObject (class in bin.referencelinker) ReplaceStub (class in bin.referencelinker) resize_headings() (bin.teimanipulate.TeiManipulate method) return_elements() (bin.manipulate.Manipulate method) root (in module heimpt.tools.scripts.endnotes2footnotes) (in module heimpt.tools.scripts.endnotes2footnotes.snd) (in module heimpt.tools.scripts.stripTitleNumbering)

run() (bin.bibliographyaddins.BibliographyAddins method) (bin.bibliographyaddins.MendeleyHandler method) (bin.bibliographyaddins.OtherHandler method) (bin.bibliographyaddins.ZoteroHandler method) (bin.bibliographyclassifier.BibliographyClassifier method) (bin.bibliographydatabase.BibliographyDatabase method) (bin.complianceenforcer.ComplianceEnforcer method) (bin.docxtotei.DocxToTei method) (bin.frontmatterparser.FrontMatterParser method) (bin.idgenerator.IdGenerator method) (bin.listclassifier.ListClassifier method) (bin.meTypeset.MeTypeset method) (bin.metadata.Metadata method) (bin.referencelinker.ReferenceLinker method) (bin.sizeclassifier.SizeClassifier method) (bin.teimanipulate.TeiManipulate method) (bin.teitonlm.TeiToNlm method) (bin.unoconvtodocx.UnoconvToDocx method) (bin.xslchainer.XslChain method) (heimpt.disseminate.Disseminate method) (heimpt.merge.Merge method) (heimpt.plugins.import.ImportInterface.Import method) (heimpt.plugins.import.ojs.ojs.OJSImport method) (heimpt.plugins.import.omp.omp.OMPImport method) (heimpt.prepare.Prepare method) run_ah_fop() (heimpt.disseminate.Disseminate method) run_apache_fop() (heimpt.disseminate.Disseminate method) run_ext_link_compliance() (bin.captionclassifier.CaptionClassifier method) run_fop_processor() (heimpt.disseminate.Disseminate method) run_graphics() (bin.captionclassifier.CaptionClassifier method) run_graphics_sibling() (bin.captionclassifier.CaptionClassifier method) run_modules() (bin.meTypeset.MeTypeset method) (heimpt.heimpt.MPT method) run_prompt() (bin.bibliographyclassifier.BibliographyClassifier method) (bin.referencelinker.ReferenceLinker method) run_quirks() (bin.teitonlm.TeiToNlm method) run_saxon() (heimpt.disseminate.Disseminate method) run_tables() (bin.captionclassifier.CaptionClassifier method) run_transform() (bin.teitonlm.TeiToNlm method) (bin.xslchainer.XslChain method) run_typesetter() (heimpt.heimpt.MPT method) runTest() (in module heimpt.tools.archive.runTest)

S

save_tree() (bin.nlmmanipulate.NlmManipulate method) (bin.teimanipulate.TeiManipulate method) saxon_arbitrary_xsl() (bin.xslchainer.XslChain method) saxon_doc_to_tei() (bin.docxtotei.DocxToTei method) saxon_omml_to_mml() (bin.docxtotei.DocxToTei method) saxon_tei2nlm() (bin.teitonlm.TeiToNlm method) search() (bin.zotero._noteProvider.gnoteProvider.GnoteProvider method) (bin.zotero.libzotero.LibZotero method) search_and_copy() (bin.nlmmanipulate.NlmManipulate static method) search_and_replace_dom() (bin.manipulate.Manipulate static method) search_references() (bin.referencelinker.ReferenceLinker method) SEP (in module heimpt.heimpt) set_book_part_attributes() (heimpt.merge.Merge method) set_dom_tree() (bin.listclassifier.ListClassifier static method) (bin.manipulate.Manipulate static method) (bin.sizeclassifier.SizeClassifier method) set_dom_tree_with_parser() (bin.manipulate.Manipulate static method) set_element_citations() (in module heimpt.cmos2jats_citations) set_enumeration() (heimpt.tools.archive.postProcess.PostProcess method) set_java_classpath() (bin.globals.GV method)

set_metadata_file() (bin.meTypeset.MeTypeset method) set_numbering() (heimpt.tools.archive.postProcess.PostProcess method) set_numbering_tags() (heimpt.globals.GV method) set_numbering_values() (heimpt.prepare.Prepare method) set_roman_numbers() (heimpt.prepare.Prepare method) (heimpt.tools.archive.postProcess.PostProcess method) set_uuid_figs() (heimpt.tools.archive.postProcess.PostProcess method) set_uuid_fns() (heimpt.tools.archive.postProcess.PostProcess method) set_uuids_for_back_matter() (heimpt.prepare.Prepare method) Settings (class in bin.settingsconfiguration) (class in heimpt.settingsconfiguration) setup_settings_file() (bin.settingsconfiguration.Settings static method) simple_format() (bin.zotero.zotero_item.zoteroItem method) SizeClassifier (class in bin.sizeclassifier) sort_by_tags() (heimpt.prepare.Prepare method) sort_footnotes() (heimpt.prepare.Prepare method) sort_references() (heimpt.prepare.Prepare method) (heimpt.tools.archive.postProcess.PostProcess method) stringify() (heimpt.tools.archive.postProcess.PostProcess method) stripped (in module heimpt.tools.scripts.stripTitleNumbering) submission_files_exists() (heimpt.plugins.import.omp.omp.OMPImport method)

T

t (in module heimpt.cmos2jats_citations) tag_bibliography() (bin.teimanipulate.TeiManipulate method) tag_bibliography_non_csl() (bin.teimanipulate.TeiManipulate method) tag_bibliography_refs() (bin.nlmmanipulate.NlmManipulate method) tag_headings() (bin.teimanipulate.TeiManipulate method) tag_query (bin.zotero.libzotero.LibZotero attribute) TeiManipulate (class in bin.teimanipulate) TEIProcess (class in heimpt.tools.archive.TEIProcess) TeiToNlm (class in bin.teitonlm) templates_path (in module conf) term_author (in module bin.zotero.zotero_item) term_collection (in module bin.zotero.zotero_item)

term_date (in module bin.zotero.zotero_item) term_publication (in module bin.zotero.zotero_item) term_tag (in module bin.zotero.zotero_item) term_title (in module bin.zotero.zotero_item) tree (in module heimpt.tools.scripts.endnotes2footnotes) (in module heimpt.tools.scripts.endnotes2footnotes.snd) (in module heimpt.tools.scripts.stripTitleNumbering) try_list_of_regex() (bin.manipulate.Manipulate static method) typeset_all_projects() (heimpt.heimpt.MPT method) typeset_file() (heimpt.heimpt.MPT method) typeset_files() (heimpt.heimpt.MPT method) typeset_project() (heimpt.heimpt.MPT method)

U

unconfirm() (bin.bibliographyclassifier.BibliographyClassifier method) unoconv_to_docx() (bin.unoconvtodocx.UnoconvToDocx method) UnoconvToDocx (class in bin.unoconvtodocx) update() (bin.zotero.libzotero.LibZotero method)

update_tmp_file() (bin.frontmatterparser.FrontMatterParser method) (bin.manipulate.Manipulate static method) usage() (in module heimpt.tools.archive.runTest) USER_GROUP_TO_CONTRIB_TYPE (in module heimpt.plugins.import.omp.omp)

V

valid_location() (in module bin.zotero.libzotero)

validate_paths() (heimpt.tools.archive.runTest.Pipeline method) verify_headings() (bin.sizeclassifier.SizeClassifier method)

W

Website (class in bin.bibliographydatabase) write_error() (bin.debug.Debug method) write_output() (bin.frontmatterparser.FrontMatterParser method) (bin.manipulate.Manipulate static method)

write_project_config() (heimpt.plugins.import.omp.omp.OMPImport method) write_xml_to_file() (heimpt.plugins.import.omp.omp.OMPImport method)

X

xml2cit() (heimpt.tools.archive.runTest.Pipeline method) xml2fo() (heimpt.tools.archive.runTest.Pipeline method) xml2html() (heimpt.tools.archive.runTest.Pipeline method)

xml_end() (bin.manipulate.Manipulate static method) xml_start() (bin.manipulate.Manipulate static method) XslChain (class in bin.xslchainer)

Z

ZoteroHandler (class in bin.bibliographyaddins)

zoteroItem (class in bin.zotero.zotero_item)